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Unless things have changed, I was under the impression that all Provisioning jobs were run as local system unless you scripted it out. I had issues trying to run provisioning scripts as a current user, more info here:
maybe it will help.
Good workarround, I did something like that also.
I discovered that the Execute File function is working correctly at all in my 88 environment. In some strange way it doesn’t accept command line parameters. In 9.0 SP1 the same scripts runs fine.