Not quite clear what you are doing, but the primary file is always copied down. You do not need to add it in Additional files, this is to contain all files in addition to the primary file.
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Do you see any errors in the Windows event log on the target computer regarding the installation of the msi?
Sorry everyone, was off two weeks during the holiday. I have not had a chance to review the answers.. I will get back to you both this week after I review.